Getting started | Finches Examples | Anoles example | Citation
Package: pmc 1.0.6
pmc: Phylogenetic Monte Carlo
Monte Carlo based model choice for applied phylogenetics of continuous traits. Method described in Carl Boettiger, Graham Coop, Peter Ralph (2012) Is your phylogeny informative? Measuring the power of comparative methods, Evolution 66 (7) 2240-51. <doi:10.1111/j.1558-5646.2011.01574.x>.
Authors:
pmc_1.0.6.tar.gz
pmc_1.0.6.zip(r-4.7)pmc_1.0.6.zip(r-4.6)pmc_1.0.6.zip(r-4.5)
pmc_1.0.6.tgz(r-4.6-any)pmc_1.0.6.tgz(r-4.5-any)
pmc_1.0.6.tar.gz(r-4.7-any)pmc_1.0.6.tar.gz(r-4.6-any)
pmc_1.0.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
pmc/json (API)
| # Install 'pmc' in R: |
| install.packages('pmc', repos = c('https://cboettig.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/cboettig/pmc/issues
Last updated from:2b0b649879. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 198 | ||
| source / vignettes | OK | 207 | ||
| linux-release-x86_64 | OK | 219 | ||
| macos-release-arm64 | OK | 112 | ||
| macos-oldrel-arm64 | OK | 151 | ||
| windows-devel | OK | 177 | ||
| windows-release | OK | 176 | ||
| windows-oldrel | OK | 148 | ||
| wasm-release | OK | 126 |
Dependencies:apecliclusterGenerationcodacodetoolscolorspacecombinatcpp11DEoptimdeSolvedigestdoParalleldplyrexpmfarverfastmatchforeachgeigergenericsggplot2gluegtableigraphisobanditeratorslabelinglatticelifecyclemagrittrmapsMASSMatrixmnormtmvtnormncbitnlmenumDerivoptimParallelouchphangornphytoolspillarpkgconfigpurrrquadprogR6RColorBrewerRcpprlangS7scalesscatterplot3dstringistringrsubplextibbletidyrtidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| The anoles data set | anoles |
| pmc | pmc |
| Fit any model used in PMC | pmc_fit |
| simulate gfit | simulate.gfit |
| The phylogeny for the anoles data set | tree |
| update gfit | update.gfit |
